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Publications

Nanotools for neuroscience and brain activity mapping

Cornell Affiliated Author(s)
Author
A.P. Alivisatos
A.M. Andrews
E.S. Boyden
M. Chun
G.M. Church
K. Deisseroth
J.P. Donoghue
S.E. Fraser
J. Lippincott-Schwartz
L.L. Looger
S. Masmanidis
P.L. McEuen
A.V. Nurmikko
H. Park
D.S. Peterka
C. Reid
M.L. Roukes
A. Scherer
M. Schnitzer
T.J. Sejnowski
K.L. Shepard
D. Tsao
G. Turrigiano
P.S. Weiss
C. Xu
R. Yuste
X. Zhuang
Abstract

Neuroscience is at a crossroads. Great effort is being invested into deciphering specific neural interactions and circuits. At the same time, there exist few general theories or principles that explain brain function. We attribute this disparity, in part, to limitations in current methodologies. Traditional neurophysiological approaches record the activities of one neuron or a few neurons at a time. Neurochemical approaches focus on single neurotransmitters.

Journal
ACS Nano
Date Published
Funding Source
R01NS067199
Research Area
Group (Lab)
Paul McEuen Group

A high-spatial-resolution fiber-optic-coupled CMOS imager with novel scintillator for high-energy X-ray applications

Cornell Affiliated Author(s)
Author
R.M. Baur
M.W. Tate
D.S. Dale
Sol Gruner
Abstract

A fast, high-spatial-resolution detector for high-energy microscopy work is presented. The detector uses a 2160 × 2560 CMOS chip for fast framing (up to 100 Hz in full-frame mode), coupled by a fiber optic taper to a scintillating Terbium-doped fiber optic plate for excellent stopping power even at high energies. The field of view is 7mm × 8.6mm with a resolution of 9 microns. The sensitivity is 1 e-/X-ray at 35 keV, with a read noise of 2.5 e-/pixel.

Conference Name
Conference
Date Published
Group (Lab)
Sol M. Gruner Group

A medium-format, mixed-mode pixel array detector for kilohertz X-ray imaging

Cornell Affiliated Author(s)
Author
M.W. Tate
Darol Chamberlain
K.S. Green
H.T. Philipp
P. Purohit
C. Strohman
Sol Gruner
Abstract

An X-ray pixel array detector (PAD) capable of framing up to 1 kHz is described. This hybrid detector is constructed from a 3-side buttable, 128×128 pixel module based upon the mixed-mode pixel array detector (MMPAD) chip developed jointly by Cornell and Area Detector Systems Corporation (Poway, CA). The chip uses a charge integrating front end for a high instantaneous count rate yet with single photon sensitivity. In-pixel circuitry utilizing a digital overflow counter extends the per frame dynamic range to >4×107 X-rays/pixel.

Conference Name
Conference
Date Published
Group (Lab)
Sol M. Gruner Group

Absence of the twisted superfluid state in a mean-field model of bosons on a honeycomb lattice

Cornell Affiliated Author(s)
Author
S. Choudhury
E.J. Mueller
Abstract

Motivated by recent observations, we study the stability of a Bose-Einstein condensate within a spin-dependent honeycomb lattice towards forming a "twisted superfluid" state. Our exhaustive numerical search fails to find this phase, pointing to possible non-mean-field physics. © 2013 American Physical Society.

Journal
Physical Review A - Atomic, Molecular, and Optical Physics
Date Published

Calibration and post-processing for photon-integrating pixel array detectors

Cornell Affiliated Author(s)
Author
K.S. Green
H.T. Philipp
M.W. Tate
J.T. Weiss
Sol Gruner
Abstract

We have developed calibration and data processing techniques optimized specifically for photon-integrating pixel array detectors (PADs). Primary effects to be calibrated are pixel gain variation and pixel area variation. Gain variations originate in pixel electronics and may be corrected for via a multiplicative factor. In contrast, area variations result from doping inhomogeneities in the sensor diode, which induce lateral fields that disturb the path of charge carriers as they traverse the diode, resulting in variation in the area mapped to each pixel, depending on the X-ray energy.

Conference Name
Conference
Date Published
Group (Lab)
Sol M. Gruner Group

Recovering structure from many low-information 2-D images of randomly-oriented samples

Cornell Affiliated Author(s)
Author
H.T. Philipp
K. Ayyer
M.W. Tate
V. Elser
Sol Gruner
Abstract

New sources and detectors are allowing scientists to look at matter with finer spatial and temporal resolutions. These experiments can produce data that are a series of severely Poisson limited snap-shots of randomly oriented samples. An extreme case of this is destructive imaging of single particles with an X-ray free-electron laser-many frames are needed for a reconstruction, but there is no a priori information associated with the frames about particle orientation.

Conference Name
Conference
Date Published
Group (Lab)
Sol M. Gruner Group
Veit Elser Group

The brain activity map

Cornell Affiliated Author(s)
Author
A.P. Alivisatos
M. Chun
G.M. Church
K. Deisseroth
J.P. Donoghue
R.J. Greenspan
P.L. McEuen
M.L. Roukes
T.J. Sejnowski
P.S. Weiss
R. Yuste
Abstract

Researchers propose building technologies to enable comprehensive mapping of neural circuit activity to understand brain function and disease.

Journal
Science
Date Published
Funding Source
DP1GM105376
Research Area
Group (Lab)
Paul McEuen Group

Control of the graphene-protein interface is required to preserve adsorbed protein function

Cornell Affiliated Author(s)
Author
T. Alava
J.A. Mann
Cécile Théodore
J.J. Benitez
W.R. Dichtel
J.M. Parpia
H.G. Craighead
Abstract

Graphene's suite of useful properties makes it of interest for use in biosensors. However, graphene interacts strongly with hydrophobic components of biomolecules, potentially altering their conformation and disrupting their biological activity. We have immobilized the protein Concanavalin A onto a self-assembled monolayer of multivalent tripodal molecules on single-layer graphene.

Journal
Analytical Chemistry
Date Published
Group (Lab)
Jeevak Parpia Group

Phenotypic model for early T-cell activation displaying sensitivity, specificity, and antagonism

Cornell Affiliated Author(s)
Author
P. François
G. Voisinne
E.D. Siggia
G. Altan-Bonnet
M. Vergassola
Abstract

Early T-cell activation is selected by evolution to discriminate a few foreign peptides rapidly from a vast excess of self-peptides, and it is unclear in quantitative terms how this is possible. We show that a generic proofreading cascade supplemented by a single negative feedback mediated by the Src homology 2 domain phosphatase-1 (SHP-1) accounts quantitatively for early T-cell activation, including the effects of antagonists.

Journal
Proceedings of the National Academy of Sciences of the United States of America
Date Published
Funding Source
R01AI083408
Research Area