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Publications

Direct phasing of nanocrystal diffraction

Cornell Affiliated Author(s)
Author
V. Elser
Abstract

Recent experiments at free-electron laser X-ray sources have been able to resolve the intensity distributions about Bragg peaks in nanocrystals of large biomolecules. Information derived from small shifts in the peak positions augment the Bragg samples of the particle intensity with samples of its gradients. Working on the assumption that the nanocrystal is entirely generated by lattice translations of a particle, an algorithm is developed that reconstructs the particle from intensities and intensity gradients.

Journal
Acta Crystallographica Section A: Foundations of Crystallography
Date Published
Funding Source
DE-FG02-11ER16210
Group (Lab)
Veit Elser Group

Parameter space compression underlies emergent theories and predictive models

Cornell Affiliated Author(s)
Author
B.B. Machta
R. Chachra
M.K. Transtrum
J.P. Sethna
Abstract

The microscopically complicated real world exhibits behavior that often yields to simple yet quantitatively accurate descriptions. Predictions are possible despite large uncertainties in microscopic parameters, both in physics and in multiparameter models in other areas of science. We connect the two by analyzing parameter sensitivities in a prototypical continuum theory (diffusion) and at a self-similar critical point (the Ising model).

Journal
Science
Date Published
Funding Source
DMR 1005479
DMR 1312160
1312160
1005479
Group (Lab)
James Sethna Group

Concepts relating magnetic interactions, intertwined electronic orders, and strongly correlated superconductivity

Cornell Affiliated Author(s)
Author
J.C.S. Davis
D.-H. Lee
Abstract

Unconventional superconductivity (SC) is said to occur when Cooper pair formation is dominated by repulsive electron-electron interactions, so that the symmetry of the pair wave function is other than an isotropic s-wave. The strong, on-site, repulsive electron- electron interactions that are the proximate cause of such SC are more typically drivers of commensurate magnetism. Indeed, it is the suppression of commensurate antiferromagnetism (AF) that usually allows this type of unconventional superconductivity to emerge.

Journal
Proceedings of the National Academy of Sciences of the United States of America
Date Published
Group (Lab)
J.C. Seamus Davis Group

Controlling the spontaneous emission rate of monolayer MoS2 in a photonic crystal nanocavity

Cornell Affiliated Author(s)
Author
X. Gan
Y. Gao
Fai Mak
X. Yao
R.-J. Shiue
A. Van Der Zande
M.E. Trusheim
F. Hatami
T.F. Heinz
J. Hone
D. Englund
Abstract

We report on controlling the spontaneous emission (SE) rate of a molybdenum disulfide (MoS2) monolayer coupled with a planar photonic crystal (PPC) nanocavity. Spatially resolved photoluminescence (PL) mapping shows strong variations of emission when the MoS2 monolayer is on the PPC cavity, on the PPC lattice, on the air gap, and on the unpatterned gallium phosphide substrate.

Journal
Applied Physics Letters
Date Published
Funding Source
R021 DC012440001
DE-SC0001085
DE-SC0001088
DE-AC02-98CH10886
61377035
2012CB921900
Group (Lab)
Kin Fai Mak Group

Evidence from tunneling spectroscopy for a quasi-one-dimensional origin of superconductivity in Sr2RuO4

Cornell Affiliated Author(s)
Author
I.A. Firmo
S. Lederer
C. Lupien
A.P. Mackenzie
J.C. Davis
S.A. Kivelson
Abstract

To establish the mechanism of unconventional superconductivity in Sr 2RuO4, a prerequisite is direct information concerning the momentum-space structure of the energy gaps Δi(k), and in particular whether the pairing strength is stronger ("dominant") on the quasi-one-dimensional (α and β) or on the quasi-two-dimensional (γ) Fermi surfaces. We present scanning tunneling microscopy measurements of the density of states spectra in the superconducting state of Sr 2RuO4 for 0.1Tc < T < Tc and analyze them along with published thermodynamic data using a simple phenomenological model.

Journal
Physical Review B - Condensed Matter and Materials Physics
Date Published
Group (Lab)
J.C. Seamus Davis Group

Crystal-symmetry preserving Wannier states for fractional Chern insulators

Cornell Affiliated Author(s)
Author
C.-M. Jian
X.-L. Qi
Abstract

Recently, many numerical evidences of fractional Chern insulator, i.e., the fractional quantum Hall states on lattices, are proposed when a Chern band is partially filled. Some trial wave functions of fractional Chern insulators can be obtained by mapping the fractional quantum Hall wave functions defined in the continuum onto the lattice through the Wannier state representation in which the single particle Landau orbits in the Landau levels are identified with the one-dimensional Wannier states of the Chern bands with Chern number C=1.

Journal
Physical Review B - Condensed Matter and Materials Physics
Date Published
Group (Lab)
Chao-Ming Jian Group

Influence of the exchange-correlation potential in methods based on time-dependent density-functional theory

Cornell Affiliated Author(s)
Author
P. Bleiziffer
A. Heßelmann
C. Umrigar
Andreas Görling
Abstract

Time-dependent density-functional methods are used to compute excitation energies and, via the adiabatic-connection fluctuation-dissipation theorem, ground-state correlation energies of atoms, ions, and the H2 molecule at various bond lengths. Various exchange-correlation potentials vxc and exchange-correlation kernels fxc are tested. Accurate exchange-correlation potentials are found to be essential for getting accurate energies.

Journal
Physical Review A - Atomic, Molecular, and Optical Physics
Date Published
Group (Lab)
Cyrus Umrigar Group

Imaging atomic rearrangements in two-dimensional silica glass: Watching silica's dance

Cornell Affiliated Author(s)
Author
P.Y. Huang
S. Kurasch
J.S. Alden
A. Shekhawat
A.A. Alemi
P.L. McEuen
J.P. Sethna
U. Kaiser
D.A. Muller
Abstract

Structural rearrangements control a wide range of behavior in amorphous materials, and visualizing these atomic-scale rearrangements is critical for developing and refining models for how glasses bend, break, and melt. It is difficult, however, to directly image atomic motion in disordered solids. We demonstrate that using aberration-corrected transmission electron microscopy, we can excite and image atomic rearrangements in a two-dimensional silica glass - revealing a complex dance of elastic and plastic deformations, phase transitions, and their interplay.

Journal
Science
Date Published
Funding Source
FA9550-09-1-0691
FA9550-10-1-0410
DGE-0707428
PHY-0941095
0941095
Group (Lab)
James Sethna Group
Paul McEuen Group

Single-molecule unzipping force analysis of HU-DNA complexes

Cornell Affiliated Author(s)
Author
R.T. Dame
M.A. Hall
M.D. Wang
Abstract

The genome of bacteria is organized and compacted by the action of nucleoid-associated proteins. These proteins are often present in tens of thousands of copies and bind with low specificity along the genome. DNA-bound proteins thus potentially act as roadblocks to the progression of machinery that moves along the DNA. In this study, we have investigated the effect of histone-like protein from strain U93 (HU), one of the key proteins involved in shaping the bacterial nucleoid, on DNA helix stability by mechanically unzipping single dsDNA molecules.

Journal
ChemBioChem
Date Published
Research Area
Group (Lab)
Michelle Wang Group

Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss

Cornell Affiliated Author(s)
Author
M.Y. Sheinin
M. Li
M. Soltani
K. Luger
M.D. Wang
Abstract

The nucleosome, the fundamental packing unit of chromatin, has a distinct chirality: 147 bp of DNA are wrapped around the core histones in a left-handed, negative superhelix. It has been suggested that this chirality has functional significance, particularly in the context of the cellular processes that generate DNA supercoiling, such as transcription and replication. However, the impact of torsion on nucleosome structure and stability is largely unknown.

Journal
Nature Communications
Date Published
Research Area
Group (Lab)
Michelle Wang Group