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Publications

Discovering the power of single molecules

Cornell Affiliated Author(s)
Author
R.A. Forties
M.D. Wang
Abstract

Mechanical manipulations of single biological molecules have revealed highly dynamic and mechanical processes at the molecular level. Recent developments have permitted examination of the impact of torque on these processes and visualization of detailed molecular motions, enabling studies of increasingly complex systems. Here we highlight some recent important discoveries. © 2014 Elsevier Inc.

Journal
Cell
Date Published
Research Area
Group (Lab)
Michelle Wang Group

Efficient classical density-functional theories of rigid-molecular fluids and a simplified free energy functional for liquid water

Cornell Affiliated Author(s)
Author
R. Sundararaman
Tomas Arias
Abstract

Classical density-functional theory provides an efficient alternative to molecular dynamics simulations for understanding the equilibrium properties of inhomogeneous fluids. However, application of density-functional theory to multi-site molecular fluids has so far been limited by complications due to the implicit molecular geometry constraints on the site densities, whose resolution typically requires expensive Monte Carlo methods. Here, we present a general scheme of circumventing this so-called inversion problem: compressed representations of the orientation density.

Journal
Computer Physics Communications
Date Published
Funding Source
DE-SC0001086
Group (Lab)
Tomas Arias Group

Nonlinear fluorescence modulation of an organic dye for optical data storage

Cornell Affiliated Author(s)
Author
C.W. Christenson
A. Saini
B. Valle
J. Shan
K.D. Singer
Abstract

Most approaches to high-capacity 3D optical data storage (ODS) require confinement of the writing action to a specified depth in the writing medium. This is achieved by a nonlinear photoresponse, usually two-photon absorption, which requires a pulsed long-wavelength source. Fluorescence photobleaching of a dye/polymer composite can be used at a short wavelength to store data at the diffraction limit in a layered storage medium.

Journal
Journal of the Optical Society of America B: Optical Physics
Date Published
Group (Lab)
Jie Shan Group

Implicit solvation model for density-functional study of nanocrystal surfaces and reaction pathways

Cornell Affiliated Author(s)
Author
K. Mathew
R. Sundararaman
K. Letchworth-Weaver
Tomas Arias
R.G. Hennig
Abstract

Solid-liquid interfaces are at the heart of many modern-day technologies and provide a challenge to many materials simulation methods. A realistic first-principles computational study of such systems entails the inclusion of solvent effects. In this work, we implement an implicit solvation model that has a firm theoretical foundation into the widely used density-functional code Vienna ab initio Software Package. The implicit solvation model follows the framework of joint density functional theory.

Journal
Journal of Chemical Physics
Date Published
Funding Source
DMR-1056587
0001086
1056587
1542776
Group (Lab)
Tomas Arias Group

Enhancement of perpendicular magnetic anisotropy and transmission of spin-Hall-effect-induced spin currents by a Hf spacer layer in W/Hf/CoFeB/MgO layer structures

Cornell Affiliated Author(s)
Author
Chi-Feng Pai
Minh-Hai Nguyen
Carina Belvin
Luis Vilela-Leão
D. Ralph
Robert Buhrman
Abstract

We report that strong perpendicular magnetic anisotropy of the ferromagnetic layer in a W/CoFeB/MgO multilayer structure can be established by inserting a Hf layer as thin as 0.25 nm between the W and CoFeB layers. The Hf spacer also allows transmission of spin currents generated by an in-plane charge current in the W layer to apply strong spin torque on the CoFeB, thereby enabling current-driven magnetic switching. The antidamping-like and field-like components of the spin torque exerted on a 1 nm CoFeB layer are of comparable magnitudes in this geometry.

Journal
AIP Publishing
Date Published

Linking experiment and theory for three-dimensional networked binary metal nanoparticle-triblock terpolymer superstructures

Cornell Affiliated Author(s)
Author
Z. Li
K. Hur
H. Sai
T. Higuchi
A. Takahara
H. Jinnai
Sol Gruner
U. Wiesner
Abstract

Controlling superstructure of binary nanoparticle mixtures in three dimensions from self-assembly opens enormous opportunities for the design of materials with unique properties. Here we report on how the intimate coupling of synthesis, in-depth electron tomographic characterization and theory enables exquisite control of superstructure in highly ordered porous three-dimensional continuous networks from single and binary mixtures of metal nanoparticles with a triblock terpolymer.

Journal
Nature Communications
Date Published
Group (Lab)
Sol M. Gruner Group

Direct measurement of the upper critical field in cuprate superconductors

Cornell Affiliated Author(s)
Author
Gael Grissonnanche
Olivier Cyr-Choinière
Francis Laliberté
S. René de Cotret
A. Juneau-Fecteau
S. Dufour-Beauséjour
M.-È. Delage
D. LeBoeuf
J. Chang
B.J. Ramshaw
D.A. Bonn
W.N. Hardy
R. Liang
S. Adachi
N.E. Hussey
B. Vignolle
C. Proust
M. Sutherland
S. Krämer
J.-H. Park
D. Graf
N. Doiron-Leyraud
L. Taillefer
Abstract

In the quest to increase the critical temperature Tc of cuprate superconductors, it is essential to identify the factors that limit the strength of superconductivity. The upper critical field Hc2 is a fundamental measure of that strength, yet there is no agreement on its magnitude and doping dependence in cuprate superconductors. Here we show that the thermal conductivity can be used to directly detect Hc2 in the cuprates YBa2Cu3Oy, YBa2Cu4O8 and Tl2Ba2CuO6+δ, allowing us to map out Hc2 across the doping phase diagram.

Journal
Nature Communications
Date Published
Funding Source
142434
Group (Lab)
Brad Ramshaw Group

Real-Space x-ray tomographic reconstruction of randomly oriented objects with sparse data frames

Cornell Affiliated Author(s)
Author
K. Ayyer
H.T. Philipp
M.W. Tate
V. Elser
Sol Gruner
Abstract

Schemes for X-ray imaging single protein molecules using new x-ray sources, like x-ray free electron lasers (XFELs), require processing many frames of data that are obtained by taking temporally short snapshots of identical molecules, each with a random and unknown orientation. Due to the small size of the molecules and short exposure times, average signal levels of much less than 1 photon/pixel/frame are expected, much too low to be processed using standard methods. One approach to process the data is to use statistical methods developed in the EMC algorithm (Loh & Elser, Phys. Rev.

Journal
Optics Express
Date Published
Group (Lab)
Sol M. Gruner Group
Veit Elser Group