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Publications

Using networks to relate student interactions to their recognition of strong peers

Cornell Affiliated Author(s)
Author
Meagan Sundstrom
Lee Simpfendoerfer
Annie Tan
Natasha Holmes
Abstract

Gaining recognition from peers has been shown to improve student persistence and career intentions in physics. It is important, therefore, to understand how students develop perceptions of their peers. Prior research suggests that interactions are one possible mechanism for peer recognition: interacting with others allows students to demonstrate their physics skills and knowledge and acquire recognition as a physicist. To probe this explanation directly, we use methods from social network analysis to compare students' self-reported interactions to their recognition of strong peers.

Conference Name
APS April Meeting 2023
Date Published
Group (Lab)
Natasha Holmes Group

Validating a Weekly Survey to Understand Student Division of Roles in Physics Labs

Cornell Affiliated Author(s)
Author
Matthew Dew
Emily Stump
Natasha Holmes
Abstract
In introductory physics laboratories, students typically work in groups where they divide and share different roles to complete assignments. Data on student participation in these different roles within groups help assess equity in labs. However, little work has investigated the division of these roles week-to-week with class observations as it is a time-intensive process. To address this, we designed a closed-ended survey delivered weekly during lecture to measure student perceptions of their involvement in various roles.
Conference Name
APS April Meeting 2023
Date Published
Group (Lab)
Natasha Holmes Group

Why the machine (dis)agrees: understanding uncertainty in natural language processing classifications

Cornell Affiliated Author(s)
Author
Rebeckah Fussell
Natasha Holmes
Abstract
As interest increases in using natural language processing methods ( machine coding ) to supplant labor-intensive human coding of survey responses, the physics education research community needs methods to determine the accuracy and reliability of machine coding. Existing literature uses measures of agreement between human and machine coding (e.g., Cohen s kappa) to assess machine coding.
Conference Name
APS April Meeting 2023
Date Published
Group (Lab)
Natasha Holmes Group

Introductory physics students' recognition of strong peers: Gender and racial or ethnic bias differ by course level and context

Cornell Affiliated Author(s)
Author
M. Sundstrom
A.B. Heim
B. Park
N.G. Holmes
Abstract

Researchers have pinpointed recognition from others as one of the most important dimensions of students' science and engineering identity. Studies, however, have found gender biases in students' recognition of their peers, with inconsistent patterns across introductory science and engineering courses. Toward finding the source of this variation, we examine whether a gender bias exists in students' nominations of strong peers across three different remote, introductory physics courses with varying student populations (varying demographics, majors, and course levels).

Journal
Physical Review Physics Education Research
Date Published
Funding Source
DGE-2139899
DUE-1836617
Group (Lab)
Natasha Holmes Group

Neuromuscular embodiment of feedback control elements in Drosophila flight

Cornell Affiliated Author(s)
Author
S.C. Whitehead
S. Leone
T. Lindsay
M.R. Meiselman
N.J. Cowan
M.H. Dickinson
N. Yapici
D.L. Stern
T. Shirangi
Itai Cohen
Abstract

While insects such as Drosophila are flying, aerodynamic instabilities require that they make millisecond time scale adjustments to their wing motion to stay aloft and on course. These stabilization reflexes can be modeled as a proportional-integral (PI) controller; however, it is unclear how such control might be instantiated in insects at the level of muscles and neurons.

Journal
Science Advances
Date Published
Funding Source
IOS 1452510
IOS 1546710
IOS 1845673
N00014-21-1-2431
R21AI149772
1R01NS116595
61651-EG
Research Area
Group (Lab)
Itai Cohen Group

Role of conservation laws in the density matrix renormalization group

Cornell Affiliated Author(s)
Author
T.G. Kiely
E.J. Mueller
Abstract

We explore matrix product state approximations to wave functions which have spontaneously broken symmetries or are critical. We are motivated by the fact that symmetries, and their associated conservation laws, lead to block-sparse matrix product states. Numerical calculations which take advantage of these symmetries run faster and require less memory. However, in symmetry-broken and critical phases the block-sparse ansatz yields less accurate energies. We characterize the role of conservation laws in matrix product states and determine when it is beneficial to make use of them.

Journal
Physical Review B
Date Published
Funding Source
PHY-2110250

Understanding interaction network formation across instructional contexts in remote physics courses

Cornell Affiliated Author(s)
Author
M. Sundstrom
A. Schang
A.B. Heim
N.G. Holmes
Abstract

Engaging in interactions with peers is important for student learning. Many studies have quantified patterns of student interactions in in-person physics courses using social network analysis, finding different network structures between instructional contexts (lecture and laboratory) and styles (active and traditional). Such studies also find inconsistent results as to whether and how student-level variables (e.g., grades and demographics) relate to the formation of interaction networks.

Journal
Physical Review Physics Education Research
Date Published
Funding Source
DGE-2139899
DUE-1836617

Polarity of the CRISPR roadblock to transcription

Cornell Affiliated Author(s)
Author
P.M. Hall
J.T. Inman
R.M. Fulbright
T.T. Le
J.J. Brewer
G. Lambert
S.A. Darst
M.D. Wang
Abstract

CRISPR (clustered regularly interspaced short palindromic repeats) utility relies on a stable Cas effector complex binding to its target site. However, a Cas complex bound to DNA may be removed by motor proteins carrying out host processes and the mechanism governing this removal remains unclear. Intriguingly, during CRISPR interference, RNA polymerase (RNAP) progression is only fully blocked by a bound endonuclease-deficient Cas (dCas) from the protospacer adjacent motif (PAM)-proximal side.

Journal
Nature Structural and Molecular Biology
Date Published
Research Area
Group (Lab)
Michelle Wang Group

STRAINS: A big data method for classifying cellular response to stimuli at the tissue scale

Author
J. Zheng
T.W. Jackson
L.A. Fortier
L.J. Bonassar
M.L. Delco
Itai Cohen
Abstract

Cellular response to stimulation governs tissue scale processes ranging from growth and development to maintaining tissue health and initiating disease. To determine how cells coordinate their response to such stimuli, it is necessary to simultaneously track and measure the spatiotemporal distribution of their behaviors throughout the tissue. Here, we report on a novel SpatioTemporal Response Analysis IN Situ (STRAINS) tool that uses fluorescent micrographs, cell tracking, and machine learning to measure such behavioral distributions.

Journal
PLoS ONE
Date Published
Funding Source
BMMB-1536463 IC
CMMI-1927197
DMR-1807602
K08AR068470
R01AR071394
R03AR075929
DMR-1719875
Group (Lab)
Itai Cohen Group

Reentrant rigidity percolation in structurally correlated filamentous networks

Cornell Affiliated Author(s)
Author
J. Michel
G. Von Kessel
T.W. Jackson
L.J. Bonassar
Itai Cohen
M. Das
Abstract

Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as an important paradigm for relating these filamentous tissues' mechanics to the concentrations of their constituents. Past studies have generally considered tuning of networks by spatially homogeneous variation in concentration, while ignoring structural correlation.

Journal
Physical Review Research
Date Published
Funding Source
DMR-1807602
DMR-1808026
DMR-2118449
Research Area
Group (Lab)
Itai Cohen Group