Publications
Scaling of BMP gradients in Xenopus embryos
Spectroscopic fingerprint of phase-incoherent superconductivity in the underdoped Bi2Sr2CaCu2O8+δ
A possible explanation for the existence of the cuprate "pseudogap" state is that it is a d-wave superconductor without quantum phase rigidity. Transport and thermodynamic studies provide compelling evidence that supports this proposal, but few spectroscopic explorations of it have been made. One spectroscopic signature of d-wave superconductivity is the particle-hole symmetric "octet" of dispersive Bogoliubov quasiparticle interference modulations. Here we report on this octet's evolution from low temperatures to well into the underdoped pseudogap regime.
Reconstruction algorithm for single-particle diffraction imaging experiments
We introduce the EMC algorithm for reconstructing a particle's three-dimensional (3D) diffraction intensity from very many photon shot-noise limited two-dimensional measurements, when the particle orientation in each measurement is unknown. The algorithm combines a maximization step (M) of the intensity's likelihood function, with expansion (E) and compression (C) steps that map the 3D intensity model to a redundant tomographic representation and back again.
Elastic effects of vacancies in strontium titanate: Short- and long-range strain fields, elastic dipole tensors, and chemical strain
We present a study of the local strain effects associated with vacancy defects in strontium titanate and report the first calculations of elastic dipole tensors and chemical strains for point defects in perovskites. The combination of local and long-range results will enable determination of x-ray scattering signatures that can be compared with experiments. We find that the oxygen vacancy possesses a special property-a highly anisotropic elastic dipole tensor which almost vanishes upon averaging over all possible defect orientations.
X-ray absorption spectra reveal the inapplicability of the single-band Hubbard model to overdoped cuprate superconductors
X-ray absorption spectra on the overdoped high-temperature superconductors Tl2Ba2CuO6+δ and La2-xSrxCuO4±δ reveal a striking departure in the electronic structure from that of the underdoped regime. The upper Hubbard band, identified with strong correlation effects, is not observed on the oxygen K edge, while the lowest-energy prepeak gains less intensity than expected above p∼0.21.
Fractional vortex lattice structures in spin-triplet superconductors
Motivated by recent interest in spin-triplet superconductors, we investigate the vortex lattice structures for this class of unconventional superconductors. We discuss how the order parameter symmetry can give rise to U(1) × U(1) symmetry in the same sense as in spinor condensates, making half-quantum vortices (HQVs) topologically stable. We then calculate the vortex lattice structure of HQVs, with particular attention on the roles of the crystalline lattice, the Zeeman coupling and Meissner screening, all absent in spinor condensates.
Using DNA mechanics to predict in vitro nucleosome positions and formation energies
In eukaryotic genomes, nucleosomes function to compact DNA and to regulate access to it both by simple physical occlusion and by providing the substrate for numerous covalent epigenetic tags. While competition with other DNA-binding factors and action of chromatin remodeling enzymes significantly affect nucleosome formation in vivo, nucleosome positions in vitro are determined by steric exclusion and sequence alone.
Multiple nuclear polarization states in a double quantum dot
We observe multiple stable states of nuclear polarization and nuclear self-tuning over a large range of fields in a double quantum dot under conditions of electron spin resonance. The observations can be understood within an elaborated theoretical rate equation model for the polarization in each of the dots, in the limit of strong driving. This model also captures unusual features of the data, such as fast switching and a "wrong" sign of polarization. The results reported enable applications of this polarization effect, including accurate manipulation and control of nuclear fields.
Erratum: Influence of film-mediated interactions on the microwave and radio frequency spectrum of spin-polarized hydrogen on helium films (Physical Review Letters (2008) 101 (165-301)
Stochastic kinetics of ribosomes: Single motor properties and collective behavior
Syntheses of protein molecules in a cell are carried out by ribosomes. A ribosome can be regarded as a molecular motor which utilizes the input chemical energy to move on a messenger RNA (mRNA) track that also serves as a template for the polymerization of the corresponding protein. The forward movement, however, is characterized by an alternating sequence of translocation and pause.