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Publications

Molecular Highways—Navigating Collisions of DNA Motor Proteins

Cornell Affiliated Author(s)
Author
T.T. Le
M.D. Wang
Abstract

Fundamental biological processes require concurrent sharing of DNA by numerous motor proteins and complexes. Thus, collision, congestion, and roadblocks are inescapable on these busy “molecular highways.†The consequences of these traffic problems are diverse, resulting in complex cellular mechanisms to resolve threats to genome stability and ensure cellular viability. Here, we review the different types of events and the diverse consequences that an RNA polymerase may encounter during transcription.

Journal
Journal of Molecular Biology
Date Published
Research Area
Group (Lab)
Michelle Wang Group

Resonant torsion magnetometry in anisotropic quantum materials

Cornell Affiliated Author(s)
Author
K. Modic
Maja Bachmann
B. Ramshaw
Frank Arnold
K. Shirer
Amelia Estry
Jon Betts
Nirmal Ghimire
E. Bauer
Marcus Schmidt
Michael Baenitz
E. Svanidze
Ross McDonald
Arkady Shekhter
Philip Moll
Abstract

Unusual behavior in quantum materials commonly arises from their effective low-dimensional physics, reflecting the underlying anisotropy in the spin and charge degrees of freedom. Here we introduce the magnetotropic coefficient k = ∂2F/∂θ2, the second derivative of the free energy F with respect to the magnetic field orientation θ in the crystal. We show that the magnetotropic coefficient can be quantitatively determined from a shift in the resonant frequency of a commercially available atomic force microscopy cantilever under magnetic field.

Journal
Nature Communications
Date Published
Funding Source
1157490
DMR-1157490
DMR-1644779
Group (Lab)
Brad Ramshaw Group

Fast, reliable spin-orbit-torque switching in three terminal magnetic tunnel junctions with Hf dusting layer

Cornell Affiliated Author(s)
Author
Robert Buhrman
Shengjie Shi
Yongxi Ou
Daniel Ralph
Abstract

Since the discovery of the large spin Hall effect in certain heavy metals, there has been continuous interest in utilizing this spin-orbit torque (SOT) effect in constructing a non-volatile memory that can be switched by an electric current. The key to future application of this type of memory is achieving both a short write time and a low write current, which will lower the energy cost compared to existing and other emerging memory technologies.

Conference Name
Conference
Date Published
Funding Source
W911NF-14-C0089
DMR-1120296
ECCS-0335765

Highly Efficient Spin-Current Generation by the Spin Hall Effect in Au1-xPtx

Cornell Affiliated Author(s)
Author
L. Zhu
D.C. Ralph
Robert Buhrman
Abstract

We report very efficient spin-current generation by the spin Hall effect in the alloy Au0.25Pt0.75, which, as determined by two different direct spin-orbit torque measurements, exhibits a giant internal spin Hall ratio of ≥0.58 (antidamping spin-orbit torque efficiency of approximately 0.35 in bilayers with Co), a relatively low resistivity of approximately 83 μΩ cm, an exceptionally large spin Hall conductivity of ≥7.0×105Ω-1m-1, and a spin diffusion length of 1.7 nm.

Journal
Physical Review Applied
Date Published
Funding Source
W911NF-14-C0089
DMR-1719875
ECCS-1542081
N00014-15-1-2449

Fiber embroidery of self-sensing soft actuators

Cornell Affiliated Author(s)
Author
S. Ceron
Itai Cohen
R.F. Shepherd
J.H. Pikul
C. Harnett
Abstract

Natural organisms use a combination of contracting muscles and inextensible fibers to transform into controllable shapes, camouflage into their surrounding environment, and catch prey. Replicating these capabilities with engineered materials is challenging because of the difficulty inmanufacturing and controlling soft material actuators with embedded fibers.

Journal
Biomimetics
Date Published
Funding Source
FA9550-18-1-0243
KSEF-3503- RDE-019
Group (Lab)
Itai Cohen Group

Next generation Nb3Sn cavities for linear accelerators

Cornell Affiliated Author(s)
Author
R.D. Porter
Tomas Arias
P. Cueva
D.L. Hall
M. Liepe
J.T. Maniscalco
D.A. Muller
N. Sitaraman
Abstract

Niobium-3 Tin (Nb3Sn) is a very promising alternative material for SRF accelerator cavities. The material can achieve higher quality factors, higher temperature operation and potentially higher accelerating gradients (Eacc ˜ 96 MV/m) compared to conventional niobium. This material is formed by vaporizing Sn in a high temperature vacuum furnace and letting the Sn absorb into a Nb substrate to form a 2-3 µm Nb3Sn layer. Current Nb3Sn cavities produced at Cornell achieve Q ˜ 2 · 1010 at 4.2 K and Eacc = 17 MV/m.

Conference Name
.
Date Published
Funding Source
DMR-1120296
PHY-1549132
DE-SC0008431
Group (Lab)
Tomas Arias Group

Solving protein structure from sparse serial microcrystal diffraction data at a storage-ring synchrotron source

Cornell Affiliated Author(s)
Author
T.-Y. Lan
J.L. Wierman
M.W. Tate
H.T. Philipp
J.M. Martin-Garcia
L. Zhu
D. Kissick
P. Fromme
R.F. Fischetti
W. Liu
V. Elser
Sol Gruner
Abstract

In recent years, the success of serial femtosecond crystallography and the paucity of beamtime at X-ray free-electron lasers have motivated the development of serial microcrystallography experiments at storage-ring synchrotron sources. However, especially at storage-ring sources, if a crystal is too small it will have suffered significant radiation damage before diffracting a sufficient number of X-rays into Bragg peaks for peak-indexing software to determine the crystal orientation. As a consequence, the data frames of small crystals often cannot be indexed and are discarded.

Journal
IUCrJ
Date Published
Group (Lab)
Sol M. Gruner Group
Veit Elser Group

Superdensity operators for spacetime quantum mechanics

Cornell Affiliated Author(s)
Author
Jordan Cotler
Chao-Ming Jian
Xiao-Liang Qi
Frank Wilczek
Abstract

We introduce superdensity operators as a tool for analyzing quantum information in spacetime. Superdensity operators encode spacetime correlation functions in an operator framework, and support a natural generalization of Hilbert space techniques and Dirac’s transformation theory as traditionally applied to standard density operators. Superdensity operators can be measured experimentally, but accessing their full content requires novel procedures. We demonstrate these statements on several examples.

Journal
Journal of High Energy Physics
Date Published
Funding Source
PHY-1720504
DE-SC0012567
GBMF4304
742104
335-2014-7424
Group (Lab)
Chao-Ming Jian Group

Density-functional fluctuation theory of crowds

Cornell Affiliated Author(s)
Author
J.F. Méndez-Valderrama
Y.A. Kinkhabwala
J. Silver
Itai Cohen
Tomas Arias
Abstract

A primary goal of collective population behavior studies is to determine the rules governing crowd distributions in order to predict future behaviors in new environments. Current top-down modeling approaches describe, instead of predict, specific emergent behaviors, whereas bottom-up approaches must postulate, instead of directly determine, rules for individual behaviors. Here, we employ classical density functional theory (DFT) to quantify, directly from observations of local crowd density, the rules that predict mass behaviors under new circumstances.

Journal
Nature Communications
Date Published
Funding Source
W911NF-16-1-0433
DGE-1650441
D71TW010433
Army-ARO W911NF-16-1-0433
Group (Lab)
Itai Cohen Group
Tomas Arias Group

The consequences of cavity creation on the folding landscape of a repeat protein depend upon context

Cornell Affiliated Author(s)
Author
K.A. Jenkins
M.J. Fossat
S. Zhang
D.K. Rai
S. Klein
R. Gillilan
Z. White
G. Gerlich
S.A. McCallum
R. Winter
Sol Gruner
D. Barrick
C.A. Royer
Abstract

The effect of introducing internal cavities on protein native structure and global stability has been well documented, but the consequences of these packing defects on folding free-energy landscapes have received less attention. We investigated the effects of cavity creation on the folding landscape of the leucine-rich repeat protein pp32 by high-pressure (HP) and urea-dependent NMR and high-pressure small-angle X-ray scattering (HPSAXS).

Journal
Proceedings of the National Academy of Sciences of the United States of America
Date Published
Group (Lab)
Sol M. Gruner Group