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Publications

Slow cooling and temperature-controlled protein crystallography

Cornell Affiliated Author(s)
Author
M. Warkentin
R.E. Thorne
Abstract

In cryocrystallography, rapid sample cooling is generally deemed essential to prevent solvent crystallization and associated sample damage. We show that by carefully and completely removing all external solvent, many protein crystals can be successfully cooled to T = 100 K at only 0.1 K/s without additional penetrating cryoprotectants. Slow cooling provides an alternative when flash cooling fails, and enables diffraction studies of protein structure and function at all temperatures between T = 300 K and T = 100 K. © 2009 Springer Science+Business Media B.V.

Journal
Journal of Structural and Functional Genomics
Date Published
Research Area
Group (Lab)
Robert Thorne Group

Slow cooling of protein crystals

Cornell Affiliated Author(s)
Author
M. Warkentin
R.E. Thorne
Abstract

Cryoprotectant-free thaumatin crystals have been cooled from 300 to 100 K at a rate of 0.1 K s-1 - 103-104 times slower than in conventional flash cooling - while continuously collecting X-ray diffraction data, so as to follow the evolution of protein lattice and solvent properties during cooling. Diffraction patterns show no evidence of crystalline ice at any temperature.

Journal
Journal of Applied Crystallography
Date Published
Research Area
Group (Lab)
Robert Thorne Group

Contact line pinning by microfabricated patterns: Effects of microscale topography

Cornell Affiliated Author(s)
Author
Y.V. Kalinin
V. Berejnov
R.E. Thorne
Abstract

We study how the microscale topography of a solid surface affects the apparent advancing and receding angles at the contact line of a liquid drop pinned to this surface. Photolithographic methods are used to produce continuous circular polymer rings of varying cross-sectional size and shape on hydrophilic silicon wafer surfaces. Drops of water and glycerol are dispensed into the areas bounded by these rings, and critical apparent advancing and receding angles are measured and correlated with the parameters that characterize the ring cross section.

Journal
Langmuir
Date Published
Research Area
Group (Lab)
Robert Thorne Group

X-ray fluorescence imaging analysis of inscription provenance

Cornell Affiliated Author(s)
Author
J. Powers
D.-M. Smilgies
E.C. Geil
K. Clinton
N. Dimitrova
M. Peachin
R.E. Thorne
Abstract

A stone tablet from New York University considered to be a copy of an inscription from Teanum Sidinicum is examined with X-ray fluorescence (XRF) and XRF imaging. Fluorescence spectra show many of the same elements seen in ancient Roman inscriptions, but the fluorescence intensity from calcium is much weaker and that from many other elements is much stronger. The weak calcium fluorescence cannot be due to X-ray absorption by other elements present, and so the tablet is unlikely to be of marble. This conclusion is supported by X-ray diffraction and electron microprobe measurements.

Journal
Journal of Archaeological Science
Date Published
Research Area
Group (Lab)
Robert Thorne Group

Controlling microdrop shape and position for biotechnology using micropatterned rings

Cornell Affiliated Author(s)
Author
Y. Kalinin
V. Berejnov
R.E. Thorne
Abstract

Photolithographic micropatterning is used to achieve topographic rather than chemical control of the static shape and position of microdrops on solid substrates in a gaseous ambient. Micrometer cross-section, millimeter-diameter circular rings with steep sidewalls strongly and robustly pin contact lines of nanoliter to 100 μl liquid drops, increasing the maximum stable drop volume and eliminating contact line motion due to transient accelerations.

Journal
Microfluidics and Nanofluidics
Date Published
Research Area
Group (Lab)
Robert Thorne Group

Nb93 NMR spin echo spectroscopy in single crystal NbSe3

Cornell Affiliated Author(s)
Author
S. Suh
W.G. Clark
P. Monceau
R.E. Thorne
S.E. Brown
Abstract

We report electric field induced phase displacements of the charge density wave (CDW) in a single crystal of NbSe3 using Nb93 NMR spin-echo spectroscopy. CDW polarizations in the pinned state induced by unipolar and bipolar pulses are linear and reversible up to at least E=(0.96)ET. The polarizations have a broad distribution extending up to phase angles of order 60° for electric fields close to threshold. No evidence for polarizations in excess of a CDW wavelength or for a divergence in polarization near ET are observed.

Journal
Physical Review Letters
Date Published
Group (Lab)
Robert Thorne Group

Cryocrystallography in capillaries: Critical glycerol concentrations and cooling rates

Cornell Affiliated Author(s)
Author
M. Warkentin
V. Stanislavskaia
K. Hammes
R.E. Thorne
Abstract

Capillary tubes have many advantages over multi-well plates for macromolecular crystal growth and handling, including the possibility of in situ structure determination. To obtain complete high-resolution X-ray data sets, cryopreservation protocols must be developed to prevent crystalline ice formation and preserve macromolecular crystal order. The minimum glycerol concentrations required to vitrify aqueous solutions during plunging into liquid nitrogen and liquid propane have been determined for capillary diameters from 3.3 mm to 150 μm.

Journal
Journal of Applied Crystallography
Date Published
Research Area
Group (Lab)
Robert Thorne Group

Temperature dependent reflectivity and anisotropic magnetization reversal in magnetically doped quasi-two-dimensional charge density wave alloys A 0.01NbSe2 (A=Cr,Mn,Fe)

Cornell Affiliated Author(s)
Author
A.F. Isakovic
R. Smith
K. Evans-Lutterodt
R.E. Thorne
G.L. Carr
Abstract

We report on a pronounced magnetic anisotropy of magnetically doped quasi-two-dimensional charge density wave (CDW) Nb Se2 at doping concentrations near 1%, and on temperature dependent reflectance, both phenomena above Nb Se2 superconducting transition (7.2 K). Unusual spikes in magnetization reversal are noticeable near 20 K, below the CDW transition (33 K), and disappear as temperature nears the superconducting transition. In the far infrared region of the spectrum, we find two sudden jumps in reflectivity, one near the CDW transition, the other near 18 K.

Journal
Journal of Applied Physics
Date Published
Group (Lab)
Robert Thorne Group

End-current injection contacts for anisotropic materials: Fabrication and application to the quasi-one-dimensional conductor Nb Se3

Cornell Affiliated Author(s)
Author
A.F. Isakovic
K. Cicak
R.E. Thorne
Abstract

We have developed a technique for making low-resistance end-current injection contacts to geometrically, electronically, and mechanically anisotropic crystals of charge-density-wave (CDW) conductors. Transport measurements on Nb Se3 show that contact resistances are reduced by nearly 2 orders of magnitude compared with the standard side-contact geometry, and yield qualitatively similar results for the contact-sensitive phase-slip process.

Journal
Physical Review B - Condensed Matter and Materials Physics
Date Published
Group (Lab)
Robert Thorne Group

A general method for hyperquenching protein crystals

Cornell Affiliated Author(s)
Author
M. Warkentin
R.E. Thorne
Abstract

During flash cooling of protein crystals in liquid cryogens, cooling rates are determined by sample size, choice of cooling liquid, and by the thickness of the cold gas layer that forms above the liquid. We describe an experimental protocol for ultra-rapid cooling of protein crystals. This protocol requires no complex apparatus, and yields ice-ring-free diffraction without the use of penetrating cryoprotectants. © 2007 Springer Science+Business Media B.V.

Journal
Journal of Structural and Functional Genomics
Date Published
Research Area
Group (Lab)
Robert Thorne Group