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Publications

Anomalous conductance oscillations and half-metallicity in atomic Ag-O chains

Cornell Affiliated Author(s)
Author
M. Strange
K.S. Thygesen
J.P. Sethna
K.W. Jacobsen
Abstract

Using spin density functional theory, we study the electronic and magnetic properties of atomically thin, suspended chains containing silver and oxygen atoms in an alternating sequence. Chains longer than 4 atoms develop a half-metallic ground state implying fully spin-polarized charge carriers. The conductances of the chains exhibit weak even-odd oscillations around an anomalously low value of 0.1G0 (G0=2e2/h) which coincide with the averaged experimental conductance in the long chain limit.

Journal
Physical Review Letters
Date Published
Research Area
Group (Lab)
James Sethna Group

Sloppiness, robustness, and evolvability in systems biology

Cornell Affiliated Author(s)
Author
B.C. Daniels
Y.-J. Chen
J.P. Sethna
R.N. Gutenkunst
C.R. Myers
Abstract

The functioning of many biochemical networks is often robust - remarkably stable under changes in external conditions and internal reaction parameters. Much recent work on robustness and evolvability has focused on the structure of neutral spaces, in which system behavior remains invariant to mutations. Recently we have shown that the collective behavior of multiparameter models is most often sloppy: insensitive to changes except along a few 'stiff' combinations of parameters, with an enormous sloppy neutral subspace.

Journal
Current Opinion in Biotechnology
Date Published
Funding Source
DGE-0333366
DMR-0705167
0333366
Research Area
Group (Lab)
James Sethna Group

Grain boundary energies and cohesive strength as a function of geometry

Cornell Affiliated Author(s)
Author
V.R. Coffman
J.P. Sethna
Abstract

Cohesive laws are stress-strain curves used in finite element calculations to describe the debonding of interfaces such as grain boundaries. It would be convenient to describe grain boundary cohesive laws as a function of the parameters needed to describe the grain boundary geometry; two parameters in two dimensions and five parameters in three dimensions. However, we find that the cohesive law is not a smooth function of these parameters. In fact, it is discontinuous at geometries for which the two grains have repeat distances that are rational with respect to one another.

Journal
Physical Review B - Condensed Matter and Materials Physics
Date Published
Funding Source
0085969
0218475
Group (Lab)
James Sethna Group

Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules

Cornell Affiliated Author(s)
Author
S. Forth
C. Deufel
M.Y. Sheinin
B. Daniels
J.P. Sethna
M.D. Wang
Abstract

The response of single DNA molecules to externally applied forces and torques was directly measured using an angular optical trap. Upon overwinding, DNA buckled abruptly as revealed by a sharp extension drop followed by a torque plateau. When the DNA was held at the buckling transition, its extension hopped rapidly between two distinct states. Furthermore, the initial plectonemic loop absorbed approximately twice as much extension as was absorbed into the plectoneme upon each additional turn.

Journal
Physical Review Letters
Date Published
Research Area
Group (Lab)
James Sethna Group
Michelle Wang Group

Shocks and slip systems: Predictions from a mesoscale theory of continuum dislocation dynamics

Cornell Affiliated Author(s)
Author
S. Limkumnerd
J.P. Sethna
Abstract

Exploring a recently developed mesoscale continuum theory of dislocation dynamics, we derive three predictions about plasticity and grain boundary formation in crystals. (1) There is a residual stress jump across grain boundaries and plasticity-induced cell walls as they form, which self-consistently acts to attract neighboring dislocations; residual stress in this theory appears as a remnant of the driving force behind wall formation under both polygonization and plastic deformation. We derive the predicted asymptotic late-time dynamics of the grain-boundary formation process.

Journal
Journal of the Mechanics and Physics of Solids
Date Published
Funding Source
DMR-0218475
ITR/ASP ACI0085969
Group (Lab)
James Sethna Group