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Publications

Confirmation and variability of the Allee effect in Dictyostelium discoideum cell populations, possible role of chemical signaling within cell clusters

Cornell Affiliated Author(s)
Author
I. Segota
M.M. Edwards
A. Campello
B.H. Rappazzo
X. Wang
A. Strandburg-Peshkin
X.-Q. Zhou
A. Rachakonda
K. Daie
A. Lussenhop
S. Lee
K. Tharratt
A. Deshmukh
E.M. Sebesta
M. Zhang
S. Lau
S. Bennedsen
J. Ginsberg
T. Campbell
C. Wang
Carl Franck
Abstract

In studies of the unicellular eukaryote Dictyostelium discoideum, many have anecdotally observed that cell dilution below a certain 'threshold density' causes cells to undergo a period of slow growth (lag). However, little is documented about the slow growth phase and the reason for different growth dynamics below and above this threshold density. In this paper, we extend and correct our earlier work to report an extensive set of experiments, including the use of new cell counting technology, that set this slow-to-fast growth transition on a much firmer biological basis.

Journal
Physical Biology
Date Published
Research Area
Group (Lab)
Carl Franck Group

Testing for the continuous spectrum of x rays predicted to accompany the photoejection of an atomic inner-shell electron

Cornell Affiliated Author(s)
Author
Philip Jacobson
Andrija Rasovic
Arthur Campello
Chase Goddard
Matthew Dykes
Yuchao Chen
J. Ko
Stanislav Stoupin
Gwen Gardner
Justin Oh
Carl Franck
Abstract

Echoing classical physics, quantum electrodynamics predicts the release of a spectral continuum of electromagnetic radiation upon the sudden acceleration of charged particles in quantum matter. Despite apparent theoretical success in describing sister nuclear processes, known as internal bremsstrahlung, following nuclear beta decay and capture, the situation of the photoejection of an electron from an inner shell of an atom, intra-atomic bremsstrahlung (IAB), is far from settled.

Journal
Physical Review A
Date Published
Funding Source
DMR-1332208
DMR-1719875
Group (Lab)
Carl Franck Group

Intense monochromatic photons above 100 keV from an inverse Compton source

Cornell Affiliated Author(s)
Author
Kirsten Deitrick
Georg Hoffstaetter
Carl Franck
Bruno Muratori
Peter Williams
Geoffrey Krafft
Balša Terzić
Joe Crone
Hywel Owen
Abstract

Quasimonochromatic x rays are difficult to produce above 100 keV, but have a number of uses in x-ray and nuclear science, particularly in the analysis of transuranic species. Inverse Compton scattering (ICS) is capable of fulfilling this need, producing photon beams with properties and energies well beyond the limits of typical synchrotron radiation facilities.

Journal
Physical Review Accelerators and Beams
Date Published
Group (Lab)
Carl Franck Group

Selection of CVD diamond crystals for x-ray monochromator applications using x-ray diffraction imaging

Cornell Affiliated Author(s)
Author
Stanislav Stoupin
Thomas Krawczyk
Zunping Liu
Carl Franck
Abstract

A set of 20 single crystal diamond plates synthesized using chemical vapor deposition (CVD) was studied using X-ray diffraction imaging to determine their applicability as side-bounce (single-reflection) Laue monochromators for synchrotron radiation. The crystal plates were of optical grade (as provided by the supplier) with (001) nominal surface orientation. High dislocation density was found for all samples. Distortions in the crystal lattice were quantified for low-index Laue reflections of interests using rocking curve topography.

Journal
Crystals
Date Published
Funding Source
1719875
DMR-1332208
DMR-1719875
DE-AC02-06CH11357
Group (Lab)
Carl Franck Group

Extracellular Processing of Molecular Gradients by Eukaryotic Cells Can Improve Gradient Detection Accuracy

Cornell Affiliated Author(s)
Author
Igor Segota
Carl Franck
Abstract

Eukaryotic cells sense molecular gradients by measuring spatial concentration variation through the difference in the number of occupied receptors to which molecules can bind. They also secrete enzymes that degrade these molecules, and it is presently not well understood how this affects the local gradient perceived by cells. Numerical and analytical results show that these enzymes can substantially increase the signal-to-noise ratio of the receptor difference and allow cells to respond to a much broader range of molecular concentrations and gradients than they would without these enzymes.

Journal
Physical Review Letters
Date Published
Group (Lab)
Carl Franck Group

CBETA - Cornell university brookhaven national laboratory electron energy recovery test accelerator

Cornell Affiliated Author(s)
Author
D. Trbojevic
S. Bellavia
M. Blaskiewicz
S. Brooks
K. Brown
C. Liu
W. Fischer
Carl Franck
Y. Hao
G. Mahler
F. Meot
R. Michnoff
M. Minty
S. Peggs
V. Ptitsyn
T. Roser
S.J. Berg
P. Thieberger
N. Tsoupas
J. Tuozzolo
F. Willeke
H. Witte
N. Banerjee
J. Barley
A. Bartnik
I. Bazarov
D. Burke
J. Crittenden
L. Cultrera
J. Dobbins
B. Dunham
R. Eichhorn
S. Full
F. Furuta
R. Gallagher
M. Ge
C. Gulliford
B. Heltsley
G. Hoffstaetter
D. Jusic
R. Kaplan
V. Kostroun
Y. Li
M. Liepe
W. Lou
C. Mayes
R. Patterson
P. Quigley
E. Smith
K. Smolenski
D. Sabol
D. Sagan
J. Sears
C. Shore
V. Veshcherevich
D. Widger
D. Douglas
Abstract

Cornell's Lab of Accelerator-based Sciences and Education (CLASSE) and the Collider Accelerator Department (BNL-CAD) are developing the first Superconducting RF multi-turn energy recovery linac with Non-Scaling Fixed Field Alternating Gradient (NS-FFAG) racetrack. The existing injector and superconducting linac at Cornell University are installed together with a single NS-FFAG arcs and straight section at the opposite side of the linac to form an Electron Energy Recovery (ERL) system.

Conference Name
Conference
Date Published
Group (Lab)
Carl Franck Group

Spontaneous emergence of large-scale cell cycle synchronization in amoeba colonies

Cornell Affiliated Author(s)
Author
Igor Segota
Laurent Boulet
David Franck
Carl Franck
Abstract

Unicellular eukaryotic amoebae Dictyostelium discoideum are generally believed to grow in their vegetative state as single cells until starvation, when their collective aspect emerges and they differentiate to form a multicellular slime mold. While major efforts continue to be aimed at their starvation-induced social aspect, our understanding of population dynamics and cell cycle in the vegetative growth phase has remained incomplete. Here we show that cell populations grown on a substrate spontaneously synchronize their cell cycles within several hours.

Journal
Physical Biology
Date Published
Funding Source
DMR-1120296
Group (Lab)
Carl Franck Group

High fidelity information processing in folic acid chemotaxis of Dictyostelium amoebae

Cornell Affiliated Author(s)
Author
Igor Segota
Surin Mong
Eitan Neidich
Archana Rachakonda
Catherine Lussenhop
Carl Franck
Abstract

Living cells depend upon the detection of chemical signals for their existence. Eukaryotic cells can sense a concentration difference as low as a few per cent across their bodies. This process was previously suggested to be limited by the receptor-ligand binding fluctuations. Here, we first determine the chemotaxis response of Dictyostelium cells to static folic acid gradients and show that they can significantly exceed this sensitivity, responding to gradients as shallow as 0.2% across the cell body.

Journal
Journal of the Royal Society Interface
Date Published
Funding Source
P01 GM078586
P01GM078586
Group (Lab)
Carl Franck Group

Live cell flattening - traditional and novel approaches

Cornell Affiliated Author(s)
Author
Christian Westendorf
Albert Bae
Christoph Erlenkamper
Edouard Galland
Carl Franck
Eberhard Bodenschatz
Carsten Beta
Abstract

Eukaryotic cell flattening is valuable for improving microscopic observations, ranging from bright field (BF) to total internal reflection fluorescence (TIRF) microscopy. Fundamental processes, such as mitosis and in vivo actin polymerization, have been investigated using these techniques. Here, we review the well known agar overlayer protocol and the oil overlay method. In addition, we present more elaborate microfluidics-based techniques that provide us with a greater level of control.

Journal
PMC Biophysics
Date Published
Group (Lab)
Carl Franck Group

Contact-mediated cell-assisted cell proliferation in a model eukaryotic single-cell organism: An explanation for the lag phase in shaken cell culture

Cornell Affiliated Author(s)
Author
Carl Franck
W. Ip
Albert Bae
N. Franck
E. Bogart
T.T. Le
Abstract

In cell culture, when cells are inoculated into fresh media, there can be a period of slow (or lag phase) growth followed by a transition to exponential growth. This period of slow growth is usually attributed to the cells' adaptation to a new environment. However, we argue that, based on observations of shaken suspension culture of Dictyostelium discoideum, a model single-cell eukaryote, this transition is due to a density effect.

Journal
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
Date Published
Research Area
Group (Lab)
Carl Franck Group