<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
  <model id="baseNetwork">
    <listOfCompartments>
      <compartment id="test_tube" size="1"/>
    </listOfCompartments>
    <listOfSpecies>
      <species id="R" compartment="test_tube" initialConcentration="0"/>
      <species id="alpha_GDP" compartment="test_tube" initialConcentration="0"/>
      <species id="betaGamma" compartment="test_tube" initialConcentration="0"/>
      <species id="GTPgS" compartment="test_tube" initialConcentration="0"/>
      <species id="alphaF_GTPgS" compartment="test_tube" initialConcentration="0"/>
      <species id="alpha_GDP_betaGamma" compartment="test_tube" initialConcentration="0"/>
      <species id="R_alpha_GDP_betaGamma" compartment="test_tube" initialConcentration="0"/>
      <species id="GDP" compartment="test_tube" initialConcentration="0"/>
      <species id="R_alphaF_GTPgS_betaGamma" compartment="test_tube" initialConcentration="0"/>
      <species id="alphaF_GTPgS_betaGamma" compartment="test_tube" initialConcentration="0"/>
      <species id="alpha" compartment="test_tube" initialConcentration="0"/>
      <species id="fluorescent" compartment="test_tube"/>
      <species id="total_alpha" compartment="test_tube"/>
    </listOfSpecies>
    <listOfParameters>
      <parameter id="k_alpha_GDP_unbinding" value="0"/>
      <parameter id="k_alpha__GTPgS_binding" value="0"/>
      <parameter id="kd_alpha" value="0"/>
      <parameter id="k_alpha_GDP__betaGamma_binding" value="0"/>
      <parameter id="k_R__alpha_GDP_betaGamma_binding" value="0"/>
      <parameter id="k_exchange" value="0"/>
      <parameter id="k_R_alphaF_GTPgS_betaGamma_unbinding" value="0"/>
      <parameter id="k_alphaF_GTPgS_betaGamma_unbinding" value="0"/>
    </listOfParameters>
    <listOfRules>
      <assignmentRule variable="fluorescent">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <plus/>
            <ci> R_alphaF_GTPgS_betaGamma </ci>
            <ci> alphaF_GTPgS </ci>
            <ci> alphaF_GTPgS_betaGamma </ci>
          </apply>
        </math>
      </assignmentRule>
      <assignmentRule variable="total_alpha">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <plus/>
            <ci> alpha </ci>
            <ci> alpha_GDP </ci>
            <ci> alpha_GDP_betaGamma </ci>
            <ci> R_alpha_GDP_betaGamma </ci>
            <ci> R_alphaF_GTPgS_betaGamma </ci>
            <ci> alphaF_GTPgS </ci>
            <ci> alphaF_GTPgS_betaGamma </ci>
          </apply>
        </math>
      </assignmentRule>
    </listOfRules>
    <listOfReactions>
      <reaction id="alpha_GDP_unbinding">
        <listOfReactants>
          <speciesReference species="alpha_GDP"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="GDP"/>
          <speciesReference species="alpha"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_alpha_GDP_unbinding </ci>
              <ci> alpha_GDP </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="alpha_GTPgS_binding">
        <listOfReactants>
          <speciesReference species="alpha"/>
          <speciesReference species="GTPgS"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="alphaF_GTPgS"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_alpha__GTPgS_binding </ci>
              <ci> alpha </ci>
              <ci> GTPgS </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="alpha_degredation">
        <listOfReactants>
          <speciesReference species="alpha"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> kd_alpha </ci>
              <ci> alpha </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="alpha_GDP__betaGamma_binding">
        <listOfReactants>
          <speciesReference species="betaGamma"/>
          <speciesReference species="alpha_GDP"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="alpha_GDP_betaGamma"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_alpha_GDP__betaGamma_binding </ci>
              <ci> alpha_GDP </ci>
              <ci> betaGamma </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="R__alpha_GDP_betaGamma_binding">
        <listOfReactants>
          <speciesReference species="alpha_GDP_betaGamma"/>
          <speciesReference species="R"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="R_alpha_GDP_betaGamma"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_R__alpha_GDP_betaGamma_binding </ci>
              <ci> R </ci>
              <ci> alpha_GDP_betaGamma </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="exchange">
        <listOfReactants>
          <speciesReference species="GTPgS"/>
          <speciesReference species="R_alpha_GDP_betaGamma"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="GDP"/>
          <speciesReference species="R_alphaF_GTPgS_betaGamma"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_exchange </ci>
              <ci> R_alpha_GDP_betaGamma </ci>
              <ci> GTPgS </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="R_alphaF_GTPgS_betaGamma_unbinding">
        <listOfReactants>
          <speciesReference species="R_alphaF_GTPgS_betaGamma"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="alphaF_GTPgS_betaGamma"/>
          <speciesReference species="R"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_R_alphaF_GTPgS_betaGamma_unbinding </ci>
              <ci> R_alphaF_GTPgS_betaGamma </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="alphaF_GTPgS_betaGamma_unbinding">
        <listOfReactants>
          <speciesReference species="alphaF_GTPgS_betaGamma"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="betaGamma"/>
          <speciesReference species="alphaF_GTPgS"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> k_alphaF_GTPgS_betaGamma_unbinding </ci>
              <ci> alphaF_GTPgS_betaGamma </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
    </listOfReactions>
  </model>
</sbml>
