<?xml version="1.0" encoding="UTF-8"?>
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  <model id="baseNetwork">
    <listOfCompartments>
      <compartment id="testTube" size="1"/>
    </listOfCompartments>
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      <species id="PDP_n" compartment="testTube" initialConcentration="4.2624"/>
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      <species id="All_TIM" compartment="testTube"/>
      <species id="All_CLK" compartment="testTube"/>
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    <listOfParameters>
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      <parameter id="D_p" value="2.68237885e-17"/>
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      <reaction id="Pdp_m__Transcription">
        <listOfProducts>
          <speciesReference species="Pdp_m"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="P_n"/>
          <modifierSpeciesReference species="PT_n"/>
          <modifierSpeciesReference species="CC_n"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> V_tPDP </ci>
                <ci> A_4 </ci>
                <ci> CC_n </ci>
              </apply>
              <apply>
                <plus/>
                <apply>
                  <times/>
                  <ci> A_4 </ci>
                  <ci> CC_n </ci>
                </apply>
                <apply>
                  <power/>
                  <apply>
                    <times/>
                    <ci> R_4 </ci>
                    <ci> PT_n </ci>
                  </apply>
                  <ci> d </ci>
                </apply>
                <apply>
                  <power/>
                  <apply>
                    <times/>
                    <ci> RR_4 </ci>
                    <ci> P_n </ci>
                  </apply>
                  <ci> d </ci>
                </apply>
                <cn> 1 </cn>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="Pdp_m__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="Pdp_m"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_PDPm </ci>
                <ci> Pdp_m </ci>
              </apply>
              <apply>
                <plus/>
                <ci> Pdp_m </ci>
                <ci> K_PDPm </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="Pdp_m__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="Pdp_m"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_m </ci>
              <ci> Pdp_m </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="VRI_n__Translation">
        <listOfProducts>
          <speciesReference species="VRI_n"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Vri_m"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> T_V </ci>
              <ci> Vri_m </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="VRI_n__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="VRI_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_Vn </ci>
                <ci> VRI_n </ci>
              </apply>
              <apply>
                <plus/>
                <ci> VRI_n </ci>
                <ci> K_Vn </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="VRI_n__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="VRI_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_n </ci>
              <ci> VRI_n </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="PDP_n__Translation">
        <listOfProducts>
          <speciesReference species="PDP_n"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Pdp_m"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> T_PDP </ci>
              <ci> Pdp_m </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="PDP_n__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="PDP_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_PDPn </ci>
                <ci> PDP_n </ci>
              </apply>
              <apply>
                <plus/>
                <ci> PDP_n </ci>
                <ci> K_PDPn </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="PDP_n__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="PDP_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_n </ci>
              <ci> PDP_n </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="Clk_m__Transcription">
        <listOfProducts>
          <speciesReference species="Clk_m"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="PDP_n"/>
          <modifierSpeciesReference species="PT_n"/>
          <modifierSpeciesReference species="VRI_n"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> V_tClk </ci>
                <apply>
                  <plus/>
                  <ci> CT </ci>
                  <apply>
                    <times/>
                    <ci> K_c1 </ci>
                    <ci> PDP_n </ci>
                  </apply>
                </apply>
              </apply>
              <apply>
                <plus/>
                <ci> CT </ci>
                <apply>
                  <times/>
                  <ci> K_c3 </ci>
                  <ci> PDP_n </ci>
                </apply>
                <apply>
                  <power/>
                  <apply>
                    <divide/>
                    <apply>
                      <times/>
                      <ci> CR </ci>
                      <ci> VRI_n </ci>
                    </apply>
                    <apply>
                      <plus/>
                      <cn type="integer"> 1 </cn>
                      <apply>
                        <times/>
                        <ci> K_c2 </ci>
                        <ci> PT_n </ci>
                      </apply>
                    </apply>
                  </apply>
                  <ci> f </ci>
                </apply>
                <cn> 1 </cn>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="Clk_m__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="Clk_m"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_Cm </ci>
                <ci> Clk_m </ci>
              </apply>
              <apply>
                <plus/>
                <ci> Clk_m </ci>
                <ci> K_Cm </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="Clk_m__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="Clk_m"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_m </ci>
              <ci> Clk_m </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CLK_c__Translation">
        <listOfProducts>
          <speciesReference species="CLK_c"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Clk_m"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> T_C </ci>
              <ci> Clk_m </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CLK_c__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="CLK_c"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_CLKc </ci>
                <ci> CLK_c </ci>
              </apply>
              <apply>
                <plus/>
                <ci> CLK_c </ci>
                <ci> K_CLKc </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CLK_c__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="CLK_c"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_p </ci>
              <ci> CLK_c </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC__Association">
        <listOfReactants>
          <speciesReference species="CLK_c"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CC_c"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> V_CC </ci>
              <ci> CLK_c </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC__Dissociation">
        <listOfReactants>
          <speciesReference species="CC_c"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CLK_c"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> V_dCC </ci>
              <ci> CC_c </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC_c__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="CC_c"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_CCc </ci>
                <ci> CC_c </ci>
              </apply>
              <apply>
                <plus/>
                <ci> CC_c </ci>
                <ci> K_CCc </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC_c__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="CC_c"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_p </ci>
              <ci> CC_c </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC_c__Nuclear__Transport">
        <listOfReactants>
          <speciesReference species="CC_c"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CC_n"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Nc </ci>
                <apply>
                  <power/>
                  <ci> CC_c </ci>
                  <ci> e </ci>
                </apply>
              </apply>
              <apply>
                <plus/>
                <apply>
                  <power/>
                  <ci> K_Nc </ci>
                  <ci> e </ci>
                </apply>
                <apply>
                  <power/>
                  <ci> CC_c </ci>
                  <ci> e </ci>
                </apply>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC_n__Specific__Degradation">
        <listOfReactants>
          <speciesReference species="CC_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> D_CC </ci>
                <ci> CC_n </ci>
              </apply>
              <apply>
                <plus/>
                <ci> CC_n </ci>
                <ci> K_CC </ci>
              </apply>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
      <reaction id="CC_n__NonSpecific__Degradation">
        <listOfReactants>
          <speciesReference species="CC_n"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> D_n </ci>
              <ci> CC_n </ci>
            </apply>
          </math>
        </kineticLaw>
      </reaction>
    </listOfReactions>
  </model>
</sbml>
